Agricultural and Biological Engineering



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Indian River Research and Education Center

Avery, P. B., Kumar, V., Xiao, Y., Powell, C. A., McKenzie, C. L. and L. S. Osborne. (2014). Selecting an ornamental pepper banker plant for Amblyseius swirskii in floriculture crops. Arthropod-Plant Interactions, 8, 49-56.

Aziz, R., Rafiq, M. T., Yang, J., Liu, D., Lu, L. L., He, Z. L., et al. (2014). Impact Assessment of Cadmium Toxicity and Its Bioavailability in Human Cell Lines (Caco-2 and HL-7702). Biomed Research International, 2014, http://dx.doi.org/10.1155/2014/839538.

Bakshi, S., He, Z. L., & Harris, W. G. (2014). A new method for separation, characterization, and quantification of natural nanoparticles from soils. Journal of Nanoparticle Research, 16, 2261. doi: 10.1007/s11051-014-2261-1

Bakshi, S., He, Z. L., & Harris, W. G. (2014). Biochar Amendment Affects Leaching Potential of Copper and Nutrient Release Behavior in Contaminated Sandy Soils. Journal of Environmental Quality, 43(6), 1894-1902.

Baldwin, E. A., Bai, J., Plotto, A., & Ritenour, M. A. (2014). Citrus Fruit Quality Assessment; Producer and Consumer Perspectives. Stuart Postharvest Review, 2, 1-7.

Cave, R. D., & Hespenheide, H. H. (2014). An annotated list of the Buprestidae (Coleoptera) known to occur in Honduras. The Coleopterists Bulletin, 68(1), 53-60.

Diaz, R., Manrique, V., Hibbard, K., Fox, A., Roda, A., Gandolfo, D., et al. (2014). Successful biological control of tropical soda apple (Solanales: Solanaceae) in Florida: A review of key program components. Florida Entomologist, 97(1), 179-190.

Diaz, R., Moscoso, D., Manrique, V., Williams, D., & Overholt, W. A. (2014). Native range density, host utilisation and life history of Calophya latiforceps (Hemiptera: Calophyidae): an herbivore of Brazilian Peppertree (Schinus terebinthifolia). Biocontrol Science and Technology, 24(5), 536-553.

DiMaggio, M. A., Broach, J. S., & Ohs, C. L. (2014). Evaluation of Ovaprim and human chorionic gonadotropin doses on spawning induction and egg and larval quality of Pigfish, Orthopristis chrysoptera. Journal of the World Aquaculture Society, 45, 243-247.

DiMaggio, M. A., Ohs, C. L., Broach, J. S., & Sink, T. D. (2014). Effect of stocking density on growth, survival, and stress physiology of Pigfish, Orthopristis chrysoptera. North American Journal of Aquaculture, 76, 201-210.

Fan, J. H., He, Z. L., Ma, L. Q., Yang, Y. G., & Stoffella, P. J. (2014). Impacts of calcium water treatment residue on the soil-water-plant system in citrus production. Plant and Soil, 374(1-2), 993-1004.

Freyre, R., & Wilson, S. B. (2014). Ruellia simplex R10-105-Q54 (‘Mayan Pink’). HortScience, 49, 499-502.

He, S., Wu, Q., & He, Z. L. (2014). Synergetic effects of DA-6/GA3 with EDTA on plant growth, extraction and detoxication of Cd by Lolium perenne. Chemosphere, 117, 132-138.

He, Z. L., Hiscock, J. G., Merlin, A., Hornung, L., Liu, Y. L., & Zhang, J. (2014). Phosphorus budget and land use relationships for the Lake Okeechobee Watershed, Florida. Ecological Engineering, 64, 325-336.

Irani, T., Wilson, S. B., Slough, D., & Rieger, M. (2014). Graduate student experiences on and off Campus: Social connectedness and perceived isolation. Journal of Distance Education, 28(1). Retrieved from http://www.ijede.ca/index.php/jde/article/view/856/1532.

Kumar V., W., V. W., Avery, P. B., Xiao Y., Powell, C. A., McKenzie, C. L. and L.S. Osborne. (2014). Effect of pollens of various ornamental cultivars on the development and reproduction of Amblyseius swirskii (Acari: Phytoseiidae). Florida Entomologist, 97, 367-373.

Le Ru, B. P., Capdevielle-Dulac, C., Toussaint, E. F. A., Conlong, D., Van den Berg, J., Pallangyo, B., et al. (2014). Integrative taxonomy of Acrapex stem borers (Lepidoptera: Noctuidae : Apameini): combining morphology and Poisson Tree Process analyses. Invertebrate Systematics, 28(5), 451-475.

Liang, J., Shohag, M. J. I., Yang, X. E., Tian, S. K., Zhang, Y. B., Feng, Y., et al. (2014). Role of sulfur assimilation pathway in cadmium hyperaccumulation by Sedum alfredii Hance. Ecotoxicology and Environmental Safety, 100, 159-165.

Manrique, V., Diaz, R., Condon, T., & Overholt, W. (2014). Host range tests reveal Paectes longiformis is not a suitable biological control agent for the invasive plant Schinus terebinthifolia. BioControl, 59(6), 761-770.

Manrique, V., Diaz, R., Erazo, L., Reddi, N., Wheeler, G. S., Williams, D., et al. (2014). Comparison of two populations of Pseudophilothrips ichini (Thysanoptera: Phlaeothripidae) as candidates for biological control of the invasive weed Schinus terebinthifolia (Sapindales: Anacardiaceae). Biocontrol Science and Technology, 24(5), 518-535.

Shentu, J. L., He, Z. L., Zeng, Y. Y., He, S. Y., Du, S. T., & Shen, D. S. (2014). Microbial Biomass and PLFA Profile Changes in Rhizosphere of Pakchoi (Brassica chinensis L.) as Affected by External Cadmium Loading. Pedosphere, 24(4), 553-562.

Smith, A. M., Wilson, S. B., Thetford, M., Nolan, K. L., & Adams, C. (2014). Performance of nine Florida native wildflower species grown in varying container substrates. Native Plants Journal, 15, 75-86.

Stratman, K. N., Overholt, W. A., Cuda, J. P., Mukherjee, A., Diaz, R., Netherland, M. D., et al. (2014). Temperature-eependent development, cold tolerance, and potential distribution of Cricotopus lebetis (Diptera: Chironomidae), a tip miner of Hydrilla verticillata (Hydrocharitaceae). Journal of Insect Science, 14(1). doi 10.1093/jisesa/ieu015.

Suleiman, A., & Boman, B. (2014). Comparison of two soil water evaporation models in a sandy soil. Irrigatoin Drainage & Systems Engineering, 3(121). doi 10.4172/2168-9768.1000121.

Takasu, K., Yoshiyasu, A. M., Burrell, A. M., Klein, P. E., Racelis, A., Goolsby, J. A., et al. (2014). Acrapex azumai Sugi (Lepidoptera: Noctuidae) as a possible biological control agent of the invasive weed Imperata cylindrica (L.) Beauv. (Poaceae) in the United States. Lepidoptera Science, 65, 30-35.

Tian, S. K., Lu, L. L., Labavitch, J. M., Webb, S. M., Yang, X. E., Brown, P. H., et al. (2014). Spatial imaging of Zn and other elements in Huanglongbing-affected grapefruit by synchrotron-based micro X-ray fluorescence investigation. Journal of Experimental Botany, 65(4), 953-964.

Van Ekert, E., Heylen, K., Rouge, P., Powell, C. A., Shatters Jr., R. G., Smagghe, G. and Borovsky, D. (2014). Aedes aegypti juvenile hormone acid methyltransferase, the ultimate enzyme in the biosynthetic pathway of juvenile hormone III, exhibits substrate control. Arthropod-Plant Interactions, 64, 62-73.

Van Ekert, E., Powell, C. A., Shatters Jr., R. G. and Borovsky, D. (2014). Control of larval and egg development in Aedes aegypti with RNA interference against juvenile hormone acid methyl transferase. Journal of Insect Physiology, 70, 143-150.

Wilson, S. B., Knox, G. W., Deng, Z., Nolan, K. L., & Aldrich, J. (2014). Landscape performance and fruiting of nine heavenly bamboo selections grown in northern and southern Florida. HortScience, 49, 706-713.

Wilson, S. B., Knox, G. W., Nolan, K. L., & Aldrich, J. (2014). Landscape performance and fruiting of 12 privet selections grown in northern and southern Florida. HortTechnology, 24(1), 148-155.

Xiao, W. D., Yang, X. E., He, Z. L., & Li, T. Q. (2014). Chromium-Resistant Bacteria Promote the Reduction of Hexavalent Chromium in Soils. Journal of Environmental Quality, 43(2), 507-516.

Yang, J. Y., He, Z. L., Yang, X. E., & Li, T. Q. (2014). Effect of lead on soil enzyme activities in two red soils. Pedosphere, 24, 817-826.

Zotarelli, L. L. R. R., D. J. Cantliffe, P. J. Stoffella, D. Gergela, and D. Fourman. (2014). Nitrogen fertilizer rate and application timing for chipping potato ‘Atlantic’. Agronomy Journal, 106, 2215-2226.



Microbiology and Cell Science

Adams, N. E., Thiaville, J. J., Proestos, J., Juárez-Vázquez, A. L., McCoy, A. J., Barona-Gómez, F., et al. (2014). Promiscuous and Adaptable Enzymes Fill “Holes” in the Tetrahydrofolate Pathway in Chlamydia Species. mBio, 5(4), e01378-01314.

Ahmed, C. M., & Johnson, H. M. (2014). Short Peptide Type I Interferon Mimetics: Therapeutics for Experimental Allergic Encephalomyelitis, Melanoma, and Viral Infections. Journal of Interferon & Cytokine Research, 34(10), 802-809.

Ahmed, C. M., & Johnson, H. M. (2014). Type I interferon mimetics bypass vaccinia virus decoy receptor virulence factor for protection of mice against lethal infection. Clinical and Vaccine Immunology, 21(8), 1178-1184.

Ahrendt, S. R., Mobberley, J. M., Visscher, P. T., Koss, L. L., & Foster, J. S. (2014). Effects of elevated carbon dioxide and salinity on the microbial diversity in lithifying microbial mats. Minerals, 4(1), 145-169.

Ali, M. M., Newsom, D. L., González, J. F., Sabag-Daigle, A., Stahl, C., Steidley, B., et al. (2014). Fructose-Asparagine is a primary nutrient during growth of salmonella in the inflamed intestine. PLoS Pathogens, 10(6), e1004209.

Almouzni, G., Altucci, L., Amati, B., Ashley, N., Baulcombe, D., Beaujean, N., et al. (2014). Relationship between genome and epigenome-challenges and requirements for future research. BMC Genomics, 15(1), 487.

Andrade, M. O., Farah, C. S., & Wang, N. (2014). The post-transcriptional regulator rsmA/csrA activates T3SS by stabilizing the 5′ UTR of hrpG, the master regulator of hrp/hrc genes, in Xanthomonas. PLoS Pathogens, 10(2), e1003945.

Ardissone, A. N., Diomel, M., Davis-Richardson, A. G., Rechcigl, K. T., Li, N., Drew, J. C., et al. (2014). Meconium microbiome analysis identifies bacteria correlated with premature birth. PLoS One, 9(3), e90784.

Boyd, B. M., Allen, J. M., de Crécy-Lagard, V., & Reed, D. L. (2014). Genome Sequence of Candidatus Riesia pediculischaeffi, Endosymbiont of Chimpanzee Lice, and Genomic Comparison of Recently Acquired Endosymbionts from Human and Chimpanzee Lice. G3: Genes| Genomes| Genetics, 4(11), 2189-2195.

Castro, E., Nieves, I. U., Mullinnix, M. T., Sagues, W. J., Hoffman, R. W., Fernández-Sandoval, M. T., et al. (2014). Optimization of dilute-phosphoric-acid steam pretreatment of Eucalyptus benthamii for biofuel production. Applied Energy, 125, 76-83.

Chaturvedi, P., Hauser, B., Foster, J., Karplus, E., Levine, L., Coutts, J., et al. (2014). A multiplexing fiber optic microsensor system for monitoring spatially resolved oxygen patterns. Sensors and Actuators B: Chemical, 196, 71-79.

Chavarria, N. E., Hwang, S., Cao, S., Fu, X., Holman, M., Elbanna, D., et al. (2014). Archaeal Tuc1/Ncs6 Homolog Required for Wobble Uridine tRNA Thiolation Is Associated with Ubiquitin-Proteasome, Translation, and RNA Processing System Homologs.  PLoS One, 9(6), e99104.

Chen, F., Jia, Z., Rice, K. C., Reinhardt, R. A., Bayles, K. W., & Wang, D. (2014). The Development of Drug-Free Therapy for Prevention of Dental Caries. Pharmaceutical Research, 31(11), 3031-3037.

Conesa, A., & Mortazavi, A. (2014). The common ground of genomics and systems biology. BMC Systems Biology, 8(2), 1-10.

Consortium, S. M.-I. (2014). A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nature Biotechnology, 32(9), 903-914.

Davis-Richardson, A. G., Ardissone, A. N., Dias, R., Simell, V., Leonard, M. T., Kemppainen, K. M., et al. (2014). Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes. Frontiers in Microbiology. doi: 10.3389/fmicb.2014.00678, 5.

de Crécy-Lagard, V. (2014). Variations in metabolic pathways create challenges for automated metabolic reconstructions: examples from the tetrahydrofolate synthesis pathway. Computational and Structural Biotechnology Journal, 10(16), 41-50.

de Diego, R. H., Boix-Chova, N., Gómez-Cabrero, D., Tegner, J., Abugessaisa, I., & Conesa, A. (2014). STATegra EMS: an experiment management system for complex next-generation omics experiments. BMC Systems Biology, 8(Suppl 2), S9. doi:10.1186/1752-0509-8-S2-S9

Desoignies, N., Carbonell, J., Moreau, J. S., Conesa, A., Dopazo, J., & Legrève, A. (2014). Molecular interactions between sugar beet and Polymyxa betae during its life cycle. Annals of Applied Biology, 164(2), 244-256.

Dunne, J., Triplett, E., Gevers, D., Xavier, R., Insel, R., Danska, J., et al. (2014). The intestinal microbiome in Type 1 diabetes. Clinical & Experimental Immunology, 177(1), 30-37.

Ehrenfreund, P., Ricco, A., Squires, D., Kitts, C., Agasid, E., Bramall, N., et al. (2014). The O/OREOS mission—astrobiology in low earth orbit.  Acta Astronautica, 93, 501-508.

Elena, T., Tsui, Y., Dempere, L., & Vermerris, W. (2014). Assessment of cationic lignin as a chloride ion scavenging cdditive in cement. Microscopy and Microanalysis, 20(S3), 1956-1957.

Endesfelder, D., zu Castell, W., Ardissone, A., Davis-Richardson, A. G., Achenbach, P., Hagen, M., et al. (2014). Compromised gut microbiota networks in children with anti-islet cell autoimmunity. Diabetes, 63(6). doi: 10.2337/db13-1676

Fagen, J. R., Leonard, M. T., Coyle, J. F., McCullough, C. M., Davis-Richardson, A. G., & Triplett, E. W. (2014). Liberibacter crescens BT-1T gen. nov.; sp. nov., first cultured member of the Liberibacter genus. International Journal of Systematic and Evolutionary Microbiology, 64, 2461-2466.

Fagen, J. R., Leonard, M. T., McCullough, C. M., Edirisinghe, J. N., Henry, C. S., Davis, M. J., et al. (2014). Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter.  PLoS One, 9(1), e84469.

Fajardo-Cavazos, P., Maughan, H., & Nicholson, W. L. (2014). Evolution in the Bacillaceae. Microbiology Spectrum, 2(5), 1-32.

Fajardo-Cavazos, P., Narvel, R., & Nicholson, W. L. (2014). Differing responses in growth and spontaneous mutation to antibiotic resistance in Bacillus subtilis and Staphylococcus epidermidis cells exposed to simulated microgravity. Gravitational and Space Research, 2(2). Retrieved from http://gravitationalandspacebiology.org/index.php/journal/article/view/660.

Folimonova, S. Y., Harper, S. J., Leonard, M. T., Triplett, E. W., & Shilts, T. (2014). Superinfection exclusion by Citrus tristeza virus does not correlate with the production of viral small RNAs. Virology, 468, 462-471.

Foster, J. S., Wheeler, R. M., & Pamphile, R. (2014). Host-microbe interactions in microgravity: assessment and implications.  Life, 4(2), 250-266.

Gao, C., Cai, Y., Wang, Y., Kang, B.-H., Aniento, F., Robinson, D. G., et al. (2014). Retention mechanisms for ER and Golgi membrane proteins. Trends in Plant Science, 19(8), 508-515.

Geddes, R. D., Wang, X., Yomano, L. P., Miller, E. N., Zheng, H., Shanmugam, K. T., et al. (2014). Polyamine transporters and polyamines encrease furfural tolerance during Xylose fermentation with ehanologenic escherichia coli strain LY180. Applied and Environmental Microbiology, 80(19), 5955-5964.

Gibson, D. M., Donzelli, B. G., Krasnoff, S. B., & Keyhani, N. O. (2014). Discovering the secondary metabolite potential encoded within entomopathogenic fungi. Natural Product Reports, 31(10), 1287-1305.

Gomez-Cabrero, D., Abugessaisa, I., Maier, D., Teschendorff, A., Merkenschlager, M., Gisel, A., et al. (2014). Data integration in the era of omics: current and future challenges. BMC Systems Biology, 8(Suppl 2), I1.

Grant, K. C., Khodadad, C. L., & Foster, J. S. (2014). Role of Hfq in an animal–microbe symbiosis under simulated microgravity conditions. International Journal of Astrobiology, 13(01), 53-61.

Green, A. R., Lewis, K. M., Barr, J. T., Jones, J. P., Lu, F., Ralph, J., et al. (2014). Determination of the structure and catalytic mechanism of Sorghum bicolor caffeic acid O-methyltransferase and the structural impact of three brown midrib12 mutations.  Plant Physiology, 165(4), 1440-1456.

Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., et al. (2014). Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science, 346(6215), 1254449.

Grosjean, H., Breton, M., Sirand-Pugnet, P., Tardy, F., Thiaucourt, F., Citti, C., et al. (2014). Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes. PLoS Genetics, 10(5), e1004363.

Han, X., Hyun, T. K., Zhang, M., Kumar, R., Koh, E.-j., Kang, B.-H., et al. (2014). Auxin-callose-mediated plasmodesmal gating is essential for tropic auxin gradient formation and signaling. Developmental Cell, 28(2), 132-146.

Henard, C. A., Carlsen, E. D., Hay, C., Kima, P. E., & Soong, L. (2014). Leishmania amazonensis amastigotes highly express a tryparedoxin peroxidase isoform that increases parasite resistance to macrophage antimicrobial defenses and fosters parasite virulence. PLoS Neglected Tropical Diseases, 8(7), e3000.

Hu, Y., Zhang, J., Jia, H., Sosso, D., Li, T., Frommer, W. B., et al. (2014). Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. Proceedings of the National Academy of Sciences, 111(4), E521-E529.

Humann, J. L., Wildung, M., Pouchnik, D., Bates, A. A., Drew, J. C., Zipperer, U. N., et al. (2014). Complete genome of the switchgrass endophyte Enterobacter clocace P101. Standards in Genomic Sciences, 9(3), 726.

Hwang, S., Cordova, B., Chavarria, N., Elbanna, D., McHugh, S., Rojas, J., et al. (2014). Conserved active site cysteine residue of archaeal THI4 homolog is essential for thiamine biosynthesis in Haloferax volcanii. BMC Microbiology, 14(1), 260.

Ibrahim, M. A., Panda, S. S., Birs, A. S., Serrano, J. C., Gonzalez, C. F., Alamry, K. A., et al. (2014). Synthesis and antibacterial evaluation of amino acid–antibiotic conjugates. Bioorganic & Medicinal Chemistry Letters, 24(7), 1856-1861.

Jia, H., & Wang, N. (2014). Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One, 9(4), e93806.

Jia, H., & Wang, N. (2014). Xcc-facilitated agroinfiltration of citrus leaves: a tool for rapid functional analysis of transgenes in citrus leaves. Plant Cell Reports, 33(12), 1993-2001.

Kima, P. E. (2014). Leishmania molecules that mediate intracellular pathogenesis. Microbes and Infection, 16(9), 721-726.

Kimura, S., Miyauchi, K., Ikeuchi, Y., Thiaville, P. C., de Crécy-Lagard, V., & Suzuki, T. (2014). Discovery of the β-barrel–type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs. Nucleic acids research, 42(14), 9350-9365.

Kogenaru, S., Yan, Q., Riera, N., Roper, M. C., Deng, X., Ebert, T. A., et al. (2014). Repertoire of novel sequence signatures for the detection of Candidatus Liberibacter asiaticus by quantitative real-time PCR. BMC microbiology, 14(1), 39. doi:10.1186/1471-2180-14-39

Larriba, E., Jaime, M. D., Carbonell-Caballero, J., Conesa, A., Dopazo, J., Nislow, C., et al. (2014). Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia. Fungal Genetics and Biology, 65, 69-80.

Li, J., & Wang, N. (2014). Foliar application of biofilm formation-inhibiting compounds enhances control of citrus canker caused by Xanthomonas citri subsp. citri. Phytopathology, 104(2), 134-142.

Luo, Z., Qin, Y., Pei, Y., & Keyhani, N. O. (2014). Ablation of the creA regulator results in amino acid toxicity, temperature sensitivity, pleiotropic effects on cellular development and loss of virulence in the filamentous fungus Beauveria bassiana. Environmental Microbiology, 16(4), 1122-1136.

Maupin-Furlow, J. A. (2014). Prokaryotic ubiquitin-like proteins. Annual Review of Microbiology, 68(1), 155-175.

Miranda, H. V., Antelmann, H., Hepowit, N., Chavarria, N. E., Krause, D. J., Pritz, J. R., et al. (2014). Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism.  Molecular & Cellular Proteomics, 13(1), 220-239.

Moeller, R., Raguse, M., Reitz, G., Okayasu, R., Li, Z., Klein, S., et al. (2014). Resistance of Bacillus subtilis spore DNA to lethal ionizing radiation damage relies primarily on spore core components and DNA repair, with minor effects of oxygen radical detoxification. Applied and Environmental Microbiology, 80(1), 104-109.

Morin-Adeline, V., Lomas, R., O’Meally, D., Stack, C., Conesa, A., & Šlapeta, J. (2014). Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification. BMC Genomics, 15(1), 955.

Mukherjee, K., Korithoski, B., & Kolaczkowski, B. (2014). Ancient origins of vertebrate-specific innate antiviral immunity. Molecular Biology and Evolution, 31(1), 140-153.

Munro, S. A., Lund, S. P., Pine, P. S., Binder, H., Clevert, D.-A., Conesa, A., et al. (2014). Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature Communications, 5. doi:10.1038/ncomms6125

Nueda, M. J., Tarazona, S., & Conesa, A. (2014). Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series. Bioinformatics, 30(18), 2598-602.

Pagliai, F. A., Gardner, C. L., Bojilova, L., Sarnegrim, A., Tamayo, C., Potts, A. H., et al. (2014). The transcriptional activator LdtR from ‘Candidatus Liberibacter asiaticus’ mediates osmotic stress tolerance. PLoS Pathogens, 10(4), e1004101.

Pagliai, F. A., Murdoch, C. C., Brown, S. M., Gonzalez, C. F., & Lorca, G. L. (2014). A dual role of the transcriptional regulator TstR provides insights into cyanide detoxification in Lactobacillus brevis. Molecular Microbiology, 92(4), 853-871.

Ponzoni, I., Nueda, M. J., Tarazona, S., Götz, S., Montaner, D., Dussaut, J. S., et al. (2014). Pathway network inference from gene expression data. BMC Systems Biology, 8(2), 1-17.

Prunetti, L., Reuter, C. J., Hepowit, N. L., Wu, Y., Barrueto, L., Miranda, H. V., et al. (2014). Structural and biochemical properties of an extreme ‘salt-loving’proteasome activating nucleotidase from the archaeon Haloferax volcanii. Extremophiles, 18(2), 283-293.

Qin, Y., Ortiz-Urquiza, A., & Keyhani, N. O. (2014). A putative methyltransferase, mtrA, contributes to development, spore viability, protein secretion and virulence in the entomopathogenic fungus Beauveria bassiana. Microbiology, 160(Pt 11), 2526-2537.

Reinhardt, J. A., Kolaczkowski, B., Jones, C. D., Begun, D. J., & Kern, A. D. (2014). Parallel geographic variation in Drosophila melanogaster. Genetics, 197(1), 361-373.

Remi, Z., Mohammad, Y., Aymeric, G., Michael, J. Z., Jiahn-Chou, G., Donald, R. M., et al. (2014). Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine. Biochemical Journal, 463(1), 145-155.

Rhee, M. S., Wei, L., Sawhney, N., Rice, J. D., John, F. J. S., Hurlbert, J. C., et al. (2014). Engineering the xylan utilization system in Bacillus subtilis for production of acidic xylooligosaccharides.  Applied and Environmental Microbiology, 80(3), 917-927.

Rummel, J. D., Beaty, D. W., Jones, M. A., Bakermans, C., Barlow, N. G., Boston, P. J., et al. (2014). A new analysis of Mars “Special Regions”: findings of the second MEPAG Special Regions Science Analysis Group (SR-SAG2). Astrobiology, 14(11), 887-968.

Sapp, A. M., Mogen, A. B., Almand, E. A., Rivera, F. E., Shaw, L. N., Richardson, A. R., et al. (2014). Contribution of the nos-pdt operon to virulence phenotypes in methicillin-sensitive Staphylococcus aureus.  PLoS One, 9(10), e108868.

Sattler, S. E., Saballos, A., Xin, Z., Funnell-Harris, D. L., Vermerris, W., & Pedersen, J. F. (2014). Characterization of novel sorghum brown midrib mutants from an EMS-mutagenized population.  G3: Genes| Genomes| Genetics, 4(11), 2115-2124.

Sawhney, N., & Preston, J. F. (2014). GH51 Arabinofuranosidase and its role in the Methylglucuronoarabinoxylan utilization system in Paenibacillus sp. Strain JDR-2.  Applied and Environmental Microbiology, 80(19), 6114-6125.

Seaver, S. M., Gerdes, S., Frelin, O., Lerma-Ortiz, C., Bradbury, L. M., Zallot, R., et al. (2014). High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.  Proceedings of the National Academy of Sciences, 111(26), 9645-9650.

Sebastian-Leon, P., Vidal, E., Minguez, P., Conesa, A., Tarazona, S., Amadoz, A., et al. (2014). Understanding disease mechanisms with models of signaling pathway activities.  BMC Systems Biology, 8(1), 121.

Tanaka, S., Brefort, T., Neidig, N., Djamei, A., Kahnt, J., Vermerris, W., et al. (2014). A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize. Elife, 3, e01355.

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