Metagenomics



Yüklə 8.24 Mb.
tarix14.01.2017
ölçüsü8.24 Mb.



Metagenomics











  • How do you generate consistent and accurate annotations for metagenomes?





FIG developed the notion of Subsystem – a generalization of “pathway” as a collection of functional roles jointly involved in a biological process or complex

  • FIG developed the notion of Subsystem – a generalization of “pathway” as a collection of functional roles jointly involved in a biological process or complex

  • Extended subsystems into FIGfams – protein families that perform the same functions.



Automated user originated processing

  • Automated user originated processing

  • Takes 1-7 hours depending on size and complexity of the genome

  • ~2,000 external submissions, including hundreds of genomes not yet publicly released.

  • Reannotation of >500 genomes complete

  • 1,000 users, 200 organizations, 25 countries.



















~19 hours of compute per input megabyte

  • ~19 hours of compute per input megabyte



  • 986 metagenomes

  • 79,417,238 sequences

  • 17,306,834,870 bp (17 Gbp)

  • Average: ~15-20 M bp per genome

  • Compute time (on a single CPU):

  • 328,814 hours = 13,700 days = 38 years









Free workshops on NMPDR, RAST, mg-RAST, SEED

  • Free workshops on NMPDR, RAST, mg-RAST, SEED

  • Contact Leslie McNeil

  • lkmcneil@ncsa.uiuc.edu

  • or visit

  • http://www.nmpdr.org/











Каталог: wordpress -> wp-content -> uploads -> 2010
2010 -> Hastaneye yatan hastaların sadece %5-10’u yoğun bakım ünitelerinde tedavi görmesine karsın
uploads -> Haus Taunus sk16-02
uploads -> Haus Taunus sk2016-Q4V02
uploads -> Cerebrovascular Arterial Studies: Extracranial Arterial Studies
2010 -> Yenidoğan İlaç Uygulamaları genel biLGİler
uploads -> Opis projektu Analiza molekularna w chorobach neurodegeneracyjnych spowodowanych mutacjami dynamicznymi. Charakterystyka chorób spowodowanych mutacjami dynamicznymi
uploads -> Wolf road prairie nature preserve plant species list
uploads -> Ehrentafel / Albo d’oro / Past Winners 2016, World Cup Schwierigkeit Männer /lead maschile /lead men
2010 -> To Focus Efforts and Resources in a Common Direction That Enables Orange County to be the Leading Convention Center District in the World


Поделитесь с Вашими друзьями:


Verilənlər bazası müəlliflik hüququ ilə müdafiə olunur ©azkurs.org 2019
rəhbərliyinə müraciət

    Ana səhifə